Publications

Papers

Adam Kowalczyk, Justin Bedo, Thomas Conway, and Bryan Beresford-Smith, The Poisson Margin Test for Normalisation Free Significance Analysis of NGS Data. Proceedings of RECOMB 2010, in-press.
Justin Bedo. Microarray Design using the Hilbert-Schmidt Independence Criterion. Proceedings of PRIB 2008.
Justin Bedo, Peter Wenzl, Adam Kowalczyk, Andrzej Kilian. Precision-mapping and statistical validation of quantitative trait loci by machine learning. BMC Genetics 2008.
Brian Parker, Simon Guenter, Justin Bedo. Stratification bias in low signal microarray studies. BMC Bioinformatics 2007.
Adam Kowalczyk, Danielle Greenawalt, Justin Bedo, Cuong Duong, Garvesh Raskutti, Robert Thomas, and Wayne Phillips. Large Validation of Anti-learnable Signature in Classiﬁcation of Response to Chemoradiotherapy in Esophageal Adenocarcinoma Patients. Optimization and systems biology 2007, pp. 213-221.
Le Song, Justin Bedo, Karsten Borgwardt, Arthur Gretton, and Alex Smola. Gene selection via the BAHSIC family of algorithms. Bioinformatics 2007, pp. 490-408.
Le Song, Alex Smola, Arthur Gretton, Karsten Borgwardt, and Justin Bedo. Supervised Feature Selection via Dependence Estimation. Machine Learning 2007, pp. 823-830.
Justin Bedo, Conrad Sanderson, and Adam Kowalczyk. An efficient alternative to SVM based recursive feature elimination with applications in natural language processing and bioinformatics. Proceedings of the Australian Join Conference of Artificial Intelligence 2006, 170-180.